Automatic blood sampling system (ABSS)
Certain automatic blood sampling systems are MR-compatible (Breuer et al., 2010), and can be used with PET-MR systems. ABSS pumps may also cause electromagnetic noise that affects MR studies (Bartlett et al., 2017). Incompatible ABSS has to be placed far from the PET-MR, requiring long tubing, and that increases the dispersion error.
On-line samplers in TPC
Currently, there are three systems for human studies installed in the Turku PET Centre, one made by GEMS and two made by Allogg. The use of our first ABSS, made by Scanditronics, was discontinued in 2018. Each on-line sampler is normally used only with a certain PET scanner, but they can be swapped if necessary. Swisstrace blood sampler with Ismatec peristaltic pump is installed in small-animal imaging unit, but it could be used in human studies as well.
Raw ABSS data can be found in PETPACS with the PET images.
Raw ABSS data must be preprocessed before the data can be used in the analysis. Each ABSS system has its own calibration coefficients and file format, but these are normally automatically taken into account by program blo2kbq (or absscal), which is part of the ABSS preprocessing. After the necessary processing and correction steps, the data format is the same as in any other TAC files in TPC.
ABSS at HR+
Data that was collected before PETPACS was available can be found in
ABSS at HRRT
Our second Allogg ABSS is used with HRRT scanner. It also has its own file format.
Before the second Allogg ABSS was installed, other ABSS systems have been used with HRRT.
ABSS at GE Advance (put out of operation in the end of 2010)
On-line detector that was normally located at GE Advance PET scanner, is manufactured by GEMS. Raw on-line detector data is stored in a specific format.
Blood data files from GE Advance studies which date back to 2000-02-02 and before that, do not contain the date of the study. The date has to be added manually to the data file in international format; without it, wrong calibration coefficients will be applied (the first measured calibration coefficients).
For example, if the study date was Sep 24 1999, add the following line to the beginning of the data file:
ABSS at ECAT931
CTI/ECAT931 scanner was put out of operation in the end of April 2005. Scanditronics on-line detector was located at ECAT931 during the years it was in operation. On-line detector is working fine, and can be used in connection with some other scanner, when necessary.
Raw on-line detector data is stored in a specific format.
The raw blood data from ECAT931 studies were written in directory
Swisstrace ABSS in BioCity
Swisstrace ABSS is connected to computer with PMOD PSAMPLE software, which is used to record and process the acquired blood data. The system can be used to measure arterial input function with an arteriovenous shunt in mice and rats, and it is installed in BioCity Turku in the small animal imaging facilities.
- Scanditronics ABSS raw data format
- Allogg ABSS #1 raw data format
- Allogg ABSS #2 raw data format
- Processing ABSS data in TPC
- Preprocessing arterial input data
- TAC file format in TPC
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Updated at: 2019-12-03
Created at: 2009-03-16
Written by: Vesa Oikonen