Modelling software

AMIDE

http://amide.sourceforge.net/

Hawe D, Fernández FRH, O'Suilleabháin L, Huang L, Wolsztynski E, O'Sullivan F. Kinetic analysis of dynamic positron emission tomography data using open-source image processing and statistical inference tools. WIREs Comput Stat. 2012; 4: 316-322.

Berkeley Madonna

http://www.berkeleymadonna.com

COMKAT

Fang Y-HD, Asthana P, Salinas C, Huang H-M, Muzic RF Jr. Integrated software environment based on COMKAT for analyzing tracer pharmacokinetics with molecular imaging. J Nucl Med. 2010; 51: 77-84.

Muzic RF Jr, Cornelius S. COMKAT: compartmental model kinetic analysis tool. J Nucl Med. 2001; 42(4): 636-645.

SAKE

Veronese M, Rizzo G, Turkheimer FE, Bertoldo A. SAKE: a new quantification tool for positron emission tomography studies. Comput Methods Progr Biomed. 2013; 111: 199-213.

Pyomo

http://www.pyomo.org

Hart WE, Watson J-P, Woodruff DL. Pyomo: modeling and solving mathematical programs in Python. Math Prog Comp. 2011; 3: 219-260.