Turku PET Centre modelling reports

1. Model equations for common compartmental models. DOI: 10.13140/2.1.1082.8800
   • Appendix A: Model equations for parallel compartmental model with additional loss rate constant
   • Appendix B: Serial compartmental model with dual input
   • Appendix C: Parallel compartmental model with dual input
2. Model equations for reference tissue compartmental models. DOI: 10.13140/2.1.1869.3127
3. Model equations for the dispersion of the input function in bolus infusion PET studies (outdated)
4. Model equations for [¹⁵O]H₂O PET perfusion (blood flow) studies
5. Model equations for myocardial perfusion studies with [¹⁵O]H₂O PET. DOI: 10.13140/2.1.1738.2402
   • Appendix A: right ventricular region
6. Equations for graphical analysis of irreversible tracers (Gjedde-Patlak plot)
7. Equations for graphical analysis of reversible tracers (Logan plot)
8. Noise model for PET time-radioactivity curves (outdated)
9. Models for plasma metabolite correction
   • Appendix A: Huang's model for plasma metabolites
   • Appendix B: Extended Carson's model for plasma metabolites
   • Appendix C: New model for plasma metabolites
10. Modelling input function (outdated)
    • Appendix A: Graham's plasma time-activity curve model
    • Appendix B: Graham's plasma time-activity curve model for parent tracer and a metabolite (restricted access)
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12. Removing bias in the graphical analysis methods (for local use only)
13. Conversion of plasma TACs to blood (for local use only)
14. Quantification of myocardial perfusion using Gd-DTPA and SAT-turboFLASH MRI
15. BNCT modelling: [¹⁸F]¹⁰B-FBPA PET (outdated)
16. Model averaging with Akaike weights
17. Parametric images of [¹¹C]flumazenil binding
    • Appendix A: Does heterogeneity affect [¹¹C]flumazenil binding maps?
18. NET and [¹⁸F]FDOPA PET (outdated)
19. Correction for time delay between PET and blood data (DRAFT)
20. Using NNLS in multilinear PET problems
    • Appendix A: testing NNLS algorithm
    • Test code
21. [¹¹C]NNC 756: validation of analysis method
22. Applications of wavelets in PET modelling
23. Multilinear solution for 4-compartment model: I. Tissue compartments in series DOI: 10.13140/2.1.1598.9762
24. Multilinear solution for 4-compartment model: II. Two parallel tissue compartments
25. Using QR decomposition for overdetermined systems
    • Appendix A: testing QR algorithm
    • Test code
26. Using GLLS to overcome bias problem
27. Using basis function method for parametric mapping
    • Appendix A: Testing basis function method with program imgbfbp
28. Study on basis function methods reliance on θ₃ parameter limits
    • Study with simulated [¹¹C]raclopride images (restricted access)
    • Phantom study (restricted access)
29. Cluster analysis for dynamic PET studies
    • Pseudo-code for the clustering algorithm based on a mixture model
    • Pseudo-code for the clustering algorithm based on a least-squares distance measure
    • Pseudo-code for the Markov random field clustering algorithm
30. Modelling of [¹¹C]PE2I
    • [¹¹C]PE2I PET data (restricted access)
    • [¹¹C]PE2I compartment model fit with plasma input (restricted access)
    • [¹¹C]PE2I multiple-time graphical analysis (Logan plot) (restricted access)
    • [¹¹C]PE2I reference tissue compartment model fit (restricted access)
    • Simulation on PVE in [¹¹C]PE2I PET studies (restricted access)
    • [¹¹C]PE2I ratio-method (restricted access)
    • [¹¹C]PE2I blood-to-plasma ratio
      [C-11]PE2I/PE2I_blood_plasma_ratio.pdf in intranet
31. Modelling ADAM and MADAM
    • Appendix A: DADAM and MADAM PET study (restricted access)
    • Appendix B: DADAM and MADAM compartmental fit with plasma input (restricted access)
    • Appendix C: DADAM and MADAM multiple-time graphical analysis (Logan plot) (restricted access)
    • Appendix D: DADAM and MADAM reference tissue compartment model fit (restricted access)
    • Appendix E: DADAM and MADAM ratio-method (restricted access)
32. Analysis of renal perfusion from [¹⁵O]H₂O PET studies
    • Appendix A: time delay correction (restricted access)
    • Appendix B: Dispersion correction (restricted access)
    • Appendix C: Pixel-by-pixel calculation with and without RBV estimation (restricted access)
33. Analysis of [¹¹C]L-deprenyl-D2 brain PET studies
    • Appendix A: processing of blood data
      [C-11]L-deprenyl-D2/tpcmod0033_app_a.pdf in intranet
    • Appendix B: blood data pharmacokinetics
      [C-11]L-deprenyl-D2/tpcmod0033_app_b.pdf in intranet
    • Appendix C: compartment model analysis of regional data
      [C-11]L-deprenyl-D2/tpcmod0033_app_c.pdf in intranet
    • Appendix D: compartment model analysis of image data (in intranet)
34. Solving compartment model ODEs (proposed)
35. Analysis of [¹¹C]TMSX PET studies
    • Appendix A: Literature survey
      [C-11]TMSX/tpcmod0035_app_a.doc in intranet
    • Appendix B: Blood/plasma ratio
      [C-11]TMSX/tpcmod0035_app_b.doc in intranet
36. Comparing equality of two time activity curves with runs test
37. Effects of decay correction in autoradiography method
    • Appendix A: Study with real [¹⁵O]H₂O PET data
38. Using modified SRTM in non-steady-state measurements
39. Model equations for myocardial perfusion studies with [1-¹¹C]acetate PET
40. Model equations for myocardial oxygen consumption studies with [¹⁵O]O₂ PET.

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Tags: Tracer, Modeling

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Updated at: 2019-01-01
Written by: Vesa Oikonen